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  • Top cofit genes for DZA65_RS08660 from Dickeya dianthicola ME23

    iron-sulfur cluster-binding protein
    SEED: Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS07125 dTDP-4-dehydrorhamnose reductase no 0.53
    2 DZA65_RS03260 lipoprotein NlpI no 0.49
    3 DZA65_RS06895 Tol-Pal system protein TolQ no 0.47
    4 DZA65_RS00795 glycosyltransferase family 9 protein no 0.46
    5 DZA65_RS12810 YnbE family lipoprotein no 0.45
    6 DZA65_RS11930 type I toxin-antitoxin system SymE family toxin no 0.44
    7 DZA65_RS09185 nuclear transport factor 2 family protein no 0.44
    8 DZA65_RS01585 serine endoprotease DegQ 0.37 0.44
    9 DZA65_RS02530 SDR family NAD(P)-dependent oxidoreductase no 0.44
    10 DZA65_RS12505 carboxy terminal-processing peptidase 0.44 0.44
    11 DZA65_RS04260 GDP-mannose pyrophosphatase NudK no 0.43
    12 DZA65_RS21420 glutamate racemase no 0.43
    13 DZA65_RS10110 citrate (pro-3S)-lyase subunit beta no 0.43
    14 DZA65_RS17985 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase no 0.43
    15 DZA65_RS14665 LysR family transcriptional regulator no 0.41
    16 DZA65_RS18580 alkaline phosphatase family protein 0.41 0.41
    17 DZA65_RS11635 aminodeoxychorismate synthase component 1 no 0.41
    18 DZA65_RS18020 RNA polymerase sigma factor RpoS no 0.41
    19 DZA65_RS07680 transcriptional regulator no 0.40
    20 DZA65_RS18080 phosphoadenylyl-sulfate reductase no 0.40

    Or look for negative cofitness