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  • Top cofit genes for DZA65_RS08040 from Dickeya dianthicola ME23

    type I-C CRISPR-associated endonuclease Cas1
    SEED: CRISPR-associated protein Cas1

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS08300 hypothetical protein 0.46 0.56
    2 DZA65_RS05605 helix-turn-helix transcriptional regulator no 0.46
    3 DZA65_RS20810 GMP/IMP nucleotidase no 0.41
    4 DZA65_RS09300 GlpM family protein no 0.41
    5 DZA65_RS16355 hypothetical protein no 0.41
    6 DZA65_RS12235 YscQ/HrcQ family type III secretion apparatus protein no 0.41
    7 DZA65_RS17790 amidohydrolase no 0.40
    8 DZA65_RS04390 accessory factor UbiK family protein no 0.40
    9 DZA65_RS22050 extracellular solute-binding protein no 0.40
    10 DZA65_RS09560 sugar efflux transporter no 0.40
    11 DZA65_RS19855 ABC transporter substrate-binding protein no 0.39
    12 DZA65_RS10630 response regulator no 0.39
    13 DZA65_RS11085 L-arabinose ABC transporter permease AraH no 0.39
    14 DZA65_RS00385 3-oxoacyl-ACP synthase no 0.38
    15 DZA65_RS08080 AcsD protein 0.35 0.38
    16 DZA65_RS15015 tail fiber assembly protein no 0.38
    17 DZA65_RS06325 nicotinamide mononucleotide deamidase-related protein YfaY no 0.38
    18 DZA65_RS20590 AraC family transcriptional regulator no 0.38
    19 DZA65_RS07305 NADH-dependent flavin oxidoreductase no 0.38
    20 DZA65_RS09835 arginine ABC transporter permease ArtQ no 0.38

    Or look for negative cofitness