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  • Top cofit genes for DZA65_RS07970 from Dickeya dianthicola ME23

    alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ
    SEED: PhnJ protein
    KEGG: PhnJ protein

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS00770 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase no 0.56
    2 DZA65_RS04335 HAMP domain-containing protein no 0.55
    3 DZA65_RS10675 hypothetical protein no 0.54
    4 DZA65_RS01465 DUF1543 domain-containing protein no 0.54
    5 DZA65_RS04585 HAMP domain-containing protein no 0.52
    6 DZA65_RS12220 type III secretion system ATPase SctN no 0.50
    7 DZA65_RS15505 long-chain fatty acid transporter FadL 0.40 0.48
    8 DZA65_RS12025 EndoU domain-containing protein no 0.48
    9 DZA65_RS16855 type I secretion system permease/ATPase no 0.46
    10 DZA65_RS09070 secretion protein HlyD 0.44 0.46
    11 DZA65_RS21250 ECA polysaccharide chain length modulation protein 0.52 0.46
    12 DZA65_RS11640 CoA pyrophosphatase no 0.45
    13 DZA65_RS20670 helix-turn-helix transcriptional regulator no 0.44
    14 DZA65_RS05965 protoheme IX farnesyltransferase 0.51 0.44
    15 DZA65_RS19875 organic hydroperoxide resistance protein no 0.44
    16 DZA65_RS09255 biotin-dependent carboxyltransferase no 0.44
    17 DZA65_RS12210 type III secretion system export apparatus subunit SctV no 0.43
    18 DZA65_RS03265 protein YrbN no 0.43
    19 DZA65_RS14920 multicopper oxidase family protein no 0.43
    20 DZA65_RS05655 hypothetical protein no 0.42

    Or look for negative cofitness