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  • Top cofit genes for DZA65_RS06900 from Dickeya dianthicola ME23

    colicin uptake protein TolR
    SEED: Tol biopolymer transport system, TolR protein
    KEGG: biopolymer transport protein TolR

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS14225 LLM class flavin-dependent oxidoreductase no 0.33
    2 DZA65_RS19500 protein CreA no 0.33
    3 DZA65_RS07845 hydrogenase 4 subunit D no 0.32
    4 DZA65_RS03800 hypothetical protein no 0.31
    5 DZA65_RS03730 ABC transporter permease no 0.30
    6 DZA65_RS05365 D-2-hydroxyacid dehydrogenase family protein no 0.29
    7 DZA65_RS15835 histidine ammonia-lyase no 0.29
    8 DZA65_RS17260 class I SAM-dependent methyltransferase no 0.29
    9 DZA65_RS00140 MarR family transcriptional regulator no 0.29
    10 DZA65_RS19510 2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB no 0.29
    11 DZA65_RS01025 membrane protein no 0.29
    12 DZA65_RS01525 LPS export ABC transporter periplasmic protein LptC 0.65 0.28
    13 DZA65_RS18900 metal ABC transporter permease no 0.28
    14 DZA65_RS17070 sulfate ABC transporter permease subunit CysT 0.49 0.27
    15 DZA65_RS11785 nitrous oxide-stimulated promoter family protein no 0.27
    16 DZA65_RS18485 glycoside hydrolase family 1 protein no 0.27
    17 DZA65_RS15830 urocanate hydratase no 0.27
    18 DZA65_RS19190 long-chain fatty acid--CoA ligase no 0.27
    19 DZA65_RS02200 hypothetical protein no 0.27
    20 DZA65_RS11340 hypothetical protein no 0.27

    Or look for negative cofitness