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  • Top cofit genes for DZA65_RS06230 from Dickeya dianthicola ME23

    Cu(I)-responsive transcriptional regulator
    SEED: HTH-type transcriptional regulator cueR
    KEGG: MerR family transcriptional regulator, copper efflux regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.55 0.43
    2 DZA65_RS11555 hypothetical protein no 0.41
    3 DZA65_RS07440 IS5 family transposase no 0.40
    4 DZA65_RS03675 NCS2 family permease 0.31 0.40
    5 DZA65_RS04640 Expansin-yoaJ no 0.40
    6 DZA65_RS10445 hypothetical protein no 0.40
    7 DZA65_RS06085 MGMT family protein no 0.40
    8 DZA65_RS21720 PLP-dependent aminotransferase family protein 0.33 0.39
    9 DZA65_RS00195 glyoxylate/hydroxypyruvate reductase GhrB no 0.38
    10 DZA65_RS11765 L-cystine transporter no 0.37
    11 DZA65_RS15710 D-amino-acid transaminase 0.64 0.37
    12 DZA65_RS03275 LLM class flavin-dependent oxidoreductase 0.32 0.36
    13 DZA65_RS18495 PTS transporter subunit EIIC no 0.36
    14 DZA65_RS06940 DUF554 domain-containing protein no 0.36
    15 DZA65_RS11570 YcgN family cysteine cluster protein 0.72 0.35
    16 DZA65_RS08720 MarR family transcriptional regulator no 0.35
    17 DZA65_RS11075 arabinose ABC transporter substrate-binding protein 0.20 0.35
    18 DZA65_RS11355 methylated-DNA--[protein]-cysteine S-methyltransferase 0.25 0.35
    19 DZA65_RS14560 helix-turn-helix transcriptional regulator no 0.35
    20 DZA65_RS17610 NAD(P)H-dependent oxidoreductase no 0.34

    Or look for negative cofitness