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  • Top cofit genes for DZA65_RS06115 from Dickeya dianthicola ME23

    multidrug efflux RND transporter permease subunit
    SEED: RND efflux system, inner membrane transporter CmeB
    KEGG: hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS06120 efflux RND transporter periplasmic adaptor subunit 0.99 0.98
    2 DZA65_RS13330 AI-2E family transporter YdiK 0.66 0.76
    3 DZA65_RS11720 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.77 0.75
    4 DZA65_RS16610 IMP dehydrogenase 0.86 0.75
    5 DZA65_RS02940 DedA family protein 0.69 0.75
    6 DZA65_RS21825 sugar kinase 0.78 0.74
    7 DZA65_RS03625 polysaccharide biosynthesis protein 0.59 0.74
    8 DZA65_RS11715 5-dehydro-4-deoxy-D-glucuronate isomerase 0.71 0.73
    9 DZA65_RS07110 dTDP-glucose 4,6-dehydratase 0.68 0.73
    10 DZA65_RS03635 sugar transferase no 0.72
    11 DZA65_RS19735 ABC transporter permease no 0.72
    12 DZA65_RS10580 glucose-6-phosphate dehydrogenase 0.83 0.72
    13 DZA65_RS06030 peptidylprolyl isomerase 0.63 0.71
    14 DZA65_RS04230 outer membrane protein assembly factor BamE 0.52 0.71
    15 DZA65_RS11655 TerC family protein 0.67 0.71
    16 DZA65_RS22240 thiol:disulfide interchange protein DsbA 0.75 0.70
    17 DZA65_RS06465 outer membrane protein assembly factor BamC 0.54 0.69
    18 DZA65_RS19740 ABC transporter ATP-binding protein 0.63 0.69
    19 DZA65_RS06860 succinate--CoA ligase subunit alpha 0.65 0.69
    20 DZA65_RS19755 glycosyltransferase 0.38 0.69

    Or look for negative cofitness