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  • Top cofit genes for DZA65_RS05745 from Dickeya dianthicola ME23

    LysR family transcriptional regulator
    SEED: Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS11135 MFS transporter 0.54 0.50
    2 DZA65_RS12440 L-threonine dehydrogenase no 0.49
    3 DZA65_RS21795 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter no 0.46
    4 DZA65_RS20710 polysaccharide lyase no 0.46
    5 DZA65_RS04545 helix-turn-helix transcriptional regulator no 0.43
    6 DZA65_RS18300 peptide-methionine (S)-S-oxide reductase MsrA no 0.42
    7 DZA65_RS14195 SDR family NAD(P)-dependent oxidoreductase no 0.42
    8 DZA65_RS16950 autonomous glycyl radical cofactor GrcA no 0.42
    9 DZA65_RS12150 phospholipase no 0.41
    10 DZA65_RS17915 tRNA/rRNA methyltransferase no 0.41
    11 DZA65_RS11235 TolC family outer membrane protein no 0.41
    12 DZA65_RS12555 hypothetical protein no 0.41
    13 DZA65_RS08830 type VI secretion system tip protein VgrG no 0.41
    14 DZA65_RS11220 serralysin family metalloprotease no 0.40
    15 DZA65_RS04305 cytosine permease no 0.40
    16 DZA65_RS04535 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF no 0.40
    17 DZA65_RS21215 O-antigen assembly polymerase no 0.40
    18 DZA65_RS13830 flagella biosynthesis regulatory protein FliZ no 0.39
    19 DZA65_RS14320 integrase arm-type DNA-binding domain-containing protein no 0.39
    20 DZA65_RS07305 NADH-dependent flavin oxidoreductase no 0.39

    Or look for negative cofitness