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  • Top cofit genes for DZA65_RS05425 from Dickeya dianthicola ME23

    tRNA pseudouridine(65) synthase TruC
    SEED: tRNA pseudouridine synthase C (EC 4.2.1.70)
    KEGG: tRNA pseudouridine synthase C

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS03015 transcriptional regulator UhpA no 0.52
    2 DZA65_RS06815 5-oxoprolinase subunit PxpA no 0.52
    3 DZA65_RS09850 N-acetylmuramoyl-L-alanine amidase 0.51 0.51
    4 DZA65_RS00350 hypothetical protein no 0.50
    5 DZA65_RS09260 allantoin permease no 0.49
    6 DZA65_RS09580 deoxyribonuclease IV 0.53 0.49
    7 DZA65_RS21935 two-component system sensor histidine kinase DcuS no 0.48
    8 DZA65_RS07010 molybdate ABC transporter substrate-binding protein 0.41 0.47
    9 DZA65_RS02305 type-2Aa cytolytic delta-endotoxin no 0.46
    10 DZA65_RS12730 ABC transporter permease subunit 0.49 0.46
    11 DZA65_RS13530 transcription-repair coupling factor 0.27 0.45
    12 DZA65_RS15210 hypothetical protein no 0.45
    13 DZA65_RS00260 DUF3053 domain-containing protein no 0.45
    14 DZA65_RS12465 nitrate reductase subunit alpha no 0.45
    15 DZA65_RS07920 anaerobic C4-dicarboxylate transporter no 0.44
    16 DZA65_RS17220 adenosylmethionine decarboxylase 0.34 0.44
    17 DZA65_RS05705 hypothetical protein no 0.44
    18 DZA65_RS18875 hypothetical protein no 0.44
    19 DZA65_RS02925 membrane protein 0.50 0.44
    20 DZA65_RS13800 RpiB/LacA/LacB family sugar-phosphate isomerase 0.40 0.44

    Or look for negative cofitness