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  • Top cofit genes for DZA65_RS05035 from Dickeya dianthicola ME23

    TIGR03752 family integrating conjugative element protein
    SEED: putative exported protein

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS04930 pilus assembly protein PilR no 0.54
    2 DZA65_RS20190 fumarate reductase subunit FrdC no 0.48
    3 DZA65_RS04950 shufflon system plasmid conjugative transfer pilus tip adhesin PilV no 0.48
    4 DZA65_RS12795 lactate utilization protein C no 0.48
    5 DZA65_RS05785 methyl-accepting chemotaxis protein no 0.46
    6 DZA65_RS14385 ATPase no 0.46
    7 DZA65_RS00580 LysR family transcriptional regulator 0.62 0.46
    8 DZA65_RS14320 integrase arm-type DNA-binding domain-containing protein no 0.46
    9 DZA65_RS09740 alpha/beta hydrolase 0.39 0.45
    10 DZA65_RS19590 MFS transporter TsgA no 0.45
    11 DZA65_RS04305 cytosine permease no 0.45
    12 DZA65_RS04535 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF no 0.45
    13 DZA65_RS12105 cupin domain-containing protein no 0.45
    14 DZA65_RS07435 As(III)-sensing metalloregulatory transcriptional repressor ArsR no 0.45
    15 DZA65_RS18575 ABC transporter permease subunit no 0.45
    16 DZA65_RS20185 succinate dehydrogenase/fumarate reductase iron-sulfur subunit 0.28 0.45
    17 DZA65_RS16280 general secretion pathway protein F no 0.44
    18 DZA65_RS02700 L-talarate/galactarate dehydratase no 0.44
    19 DZA65_RS11350 chemoreceptor no 0.44
    20 DZA65_RS07625 type IV secretion system protein VirB5 no 0.44

    Or look for negative cofitness