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  • Top cofit genes for DZA65_RS05005 from Dickeya dianthicola ME23

    integrative conjugative element protein, RAQPRD family

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS11865 tRNA 2-thiouridine(34) synthase MnmA no 0.54
    2 DZA65_RS09910 thioredoxin-disulfide reductase no 0.50
    3 DZA65_RS10485 membrane protein no 0.48
    4 DZA65_RS00795 glycosyltransferase family 9 protein no 0.48
    5 DZA65_RS22360 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG no 0.46
    6 DZA65_RS10905 TonB system transport protein TonB no 0.46
    7 DZA65_RS10810 formyltetrahydrofolate deformylase no 0.45
    8 DZA65_RS07125 dTDP-4-dehydrorhamnose reductase no 0.45
    9 DZA65_RS21275 guanosine-5'-triphosphate,3'-diphosphate diphosphatase no 0.45
    10 DZA65_RS06445 M48 family metallopeptidase no 0.45
    11 DZA65_RS13370 ABC transporter ATP-binding protein 0.41 0.45
    12 DZA65_RS00465 hypothetical protein no 0.44
    13 DZA65_RS06365 ABC transporter permease no 0.44
    14 DZA65_RS05030 TIGR03749 family integrating conjugative element protein no 0.44
    15 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA no 0.44
    16 DZA65_RS10285 LysR family transcriptional regulator no 0.43
    17 DZA65_RS06465 outer membrane protein assembly factor BamC 0.32 0.43
    18 DZA65_RS04230 outer membrane protein assembly factor BamE 0.30 0.43
    19 DZA65_RS03630 NAD-dependent epimerase/dehydratase family protein no 0.41
    20 DZA65_RS17575 ABC transporter permease no 0.41

    Or look for negative cofitness