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Cofit
Top cofit genes for DZA65_RS04625 from
Dickeya dianthicola ME23
IS4 family transposase
Rank
Hit
Name
Description
Conserved?
Cofitness
1
DZA65
_RS17485
ankyrin repeat domain-containing protein
no
0.54
2
DZA65
_RS08330
ABC transporter permease subunit
no
0.54
3
DZA65
_RS08265
ABC transporter permease
no
0.51
4
DZA65
_RS20215
DUF4156 domain-containing protein
no
0.50
5
DZA65
_RS16730
tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
no
0.49
6
DZA65
_RS04595
efflux RND transporter permease subunit
no
0.48
7
DZA65
_RS20785
PilN domain-containing protein
no
0.47
8
DZA65
_RS02925
membrane protein
no
0.47
9
DZA65
_RS15180
regulatory protein GemA
no
0.46
10
DZA65
_RS04665
TetR/AcrR family transcriptional regulator
no
0.46
11
DZA65
_RS12915
M20/M25/M40 family metallo-hydrolase
no
0.46
12
DZA65
_RS13800
RpiB/LacA/LacB family sugar-phosphate isomerase
no
0.44
13
DZA65
_RS07260
ABC transporter substrate-binding protein
no
0.44
14
DZA65
_RS16350
lysozyme
no
0.44
15
DZA65
_RS05280
TerC family protein
no
0.43
16
DZA65
_RS11585
septum site-determining protein MinC
no
0.43
17
DZA65
_RS15935
IS110 family transposase
no
0.43
18
DZA65
_RS21225
lipid III flippase WzxE
no
0.43
19
DZA65
_RS07995
phosphonate metabolism protein PhnP
no
0.42
20
DZA65
_RS04685
hypothetical protein
no
0.42
Or look for
negative cofitness