Top cofit genes for DZA65_RS04595 from Dickeya dianthicola ME23

efflux RND transporter permease subunit
SEED: RND efflux transporter

Rank	Hit	Name	Description	Conserved?	Cofitness
1	DZA65_RS13800		RpiB/LacA/LacB family sugar-phosphate isomerase	no	0.51
2	DZA65_RS03395		LysR family transcriptional regulator	no	0.48
3	DZA65_RS04625		IS4 family transposase	no	0.48
4	DZA65_RS01865		HAMP domain-containing protein	no	0.48
5	DZA65_RS08935		NAD-dependent malic enzyme	no	0.48
6	DZA65_RS07950		phosphonate metabolism transcriptional regulator PhnF	no	0.47
7	DZA65_RS19315		bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	no	0.47
8	DZA65_RS15180		regulatory protein GemA	no	0.47
9	DZA65_RS05240		oxidative damage protection protein	no	0.42
10	DZA65_RS19175		catabolite repressor/activator	0.56	0.42
11	DZA65_RS21790		sulfurtransferase TusA	no	0.42
12	DZA65_RS08995		uridine diphosphate-N-acetylglucosamine-binding protein YvcK	no	0.41
13	DZA65_RS07260		ABC transporter substrate-binding protein	no	0.41
14	DZA65_RS03805		GNAT family N-acetyltransferase	no	0.41
15	DZA65_RS21080		DNA helicase II	no	0.40
16	DZA65_RS20215		DUF4156 domain-containing protein	no	0.40
17	DZA65_RS04560		molybdopterin-dependent oxidoreductase	no	0.40
18	DZA65_RS16785		pectate lyase	no	0.40
19	DZA65_RS09055		ABC transporter permease	0.33	0.39
20	DZA65_RS22695		tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	no	0.39

Or look for negative cofitness