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Cofit
Protein
Homologs
Top cofit genes for DZA65_RS04550 from
Dickeya dianthicola ME23
rhamnogalacturonate lyase
SEED: rhamnogalacturonate lyase
Rank
Hit
Name
Description
Conserved?
Cofitness
1
DZA65
_RS19250
thiamine ABC transporter substrate binding subunit
no
0.49
2
DZA65
_RS21870
cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB
no
0.46
3
DZA65
_RS11380
DUF1471 domain-containing protein
no
0.45
4
DZA65
_RS02460
YecA family protein
0.41
0.44
5
DZA65
_RS03300
GIY-YIG nuclease family protein
no
0.43
6
DZA65
_RS02580
acetyltransferase
no
0.43
7
DZA65
_RS00740
nucleoid occlusion factor SlmA
no
0.42
8
DZA65
_RS08435
biotin-independent malonate decarboxylase subunit gamma
no
0.42
9
DZA65
_RS19865
amino acid ABC transporter permease
no
0.41
10
DZA65
_RS09145
aspartate aminotransferase family protein
no
0.41
11
DZA65
_RS20755
SPOR domain-containing protein
no
0.40
12
DZA65
_RS09040
Bax inhibitor-1/YccA family protein
no
0.40
13
DZA65
_RS06990
UDP-glucose 4-epimerase GalE
no
0.40
14
DZA65
_RS06860
succinate--CoA ligase subunit alpha
no
0.39
15
DZA65
_RS13570
glycine zipper 2TM domain-containing protein
no
0.39
16
DZA65
_RS00830
divergent polysaccharide deacetylase family protein
no
0.39
17
DZA65
_RS08515
efflux RND transporter periplasmic adaptor subunit
0.66
0.39
18
DZA65
_RS13015
L-ribulose-5-phosphate 4-epimerase
no
0.38
19
DZA65
_RS19055
GMP reductase
no
0.38
20
DZA65
_RS11735
carbohydrate ABC transporter permease
no
0.37
Or look for
negative cofitness