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  • Top cofit genes for DZA65_RS04510 from Dickeya dianthicola ME23

    ABC transporter substrate-binding protein
    SEED: Various polyols ABC transporter, periplasmic substrate-binding protein
    KEGG: multiple sugar transport system substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS18165 2-hydroxy-3-oxopropionate reductase no 0.57
    2 DZA65_RS18275 HAMP domain-containing protein 0.40 0.54
    3 DZA65_RS15085 DUF1320 domain-containing protein no 0.52
    4 DZA65_RS21320 hypothetical protein no 0.50
    5 DZA65_RS18915 DeoR/GlpR transcriptional regulator no 0.49
    6 DZA65_RS13700 ribonuclease E no 0.49
    7 DZA65_RS21930 two-component system response regulator DcuR no 0.48
    8 DZA65_RS02975 tagaturonate reductase no 0.47
    9 DZA65_RS18875 hypothetical protein no 0.47
    10 DZA65_RS04490 ribonuclease Z no 0.47
    11 DZA65_RS21430 tRNA (uridine(54)-C5)-methyltransferase TrmA no 0.46
    12 DZA65_RS16375 hypothetical protein no 0.46
    13 DZA65_RS00310 xylose isomerase no 0.46
    14 DZA65_RS19675 GTPase HflX 0.31 0.46
    15 DZA65_RS03515 tRNA-Gly no 0.45
    16 DZA65_RS11360 fumarate/nitrate reduction transcriptional regulator Fnr no 0.45
    17 DZA65_RS11720 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD 0.31 0.45
    18 DZA65_RS16725 Fe-S cluster assembly transcriptional regulator IscR no 0.45
    19 DZA65_RS22220 oxygen-independent coproporphyrinogen III oxidase 0.25 0.45
    20 DZA65_RS17535 GTPase 0.48 0.45

    Or look for negative cofitness