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  • Top cofit genes for DZA65_RS04425 from Dickeya dianthicola ME23

    LysR family transcriptional regulator
    SEED: LysR-family transcriptional regulator STM3020

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS20190 fumarate reductase subunit FrdC 0.43 0.42
    2 DZA65_RS16960 tRNA-Ala no 0.41
    3 DZA65_RS17855 Asp/Glu racemase 0.38 0.40
    4 DZA65_RS02605 oxidoreductase no 0.39
    5 DZA65_RS22100 MFS transporter 0.65 0.39
    6 DZA65_RS12675 tail assembly protein 0.18 0.39
    7 DZA65_RS08715 ABC transporter ATP-binding protein no 0.38
    8 DZA65_RS17325 polyphenol oxidase 0.31 0.38
    9 DZA65_RS02540 amidohydrolase 0.15 0.38
    10 DZA65_RS17915 tRNA/rRNA methyltransferase no 0.38
    11 DZA65_RS14475 DUF1738 domain-containing protein no 0.37
    12 DZA65_RS03480 MHS family MFS transporter 0.51 0.37
    13 DZA65_RS17230 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI no 0.37
    14 DZA65_RS08460 metal ABC transporter permease 0.29 0.37
    15 DZA65_RS12105 cupin domain-containing protein no 0.37
    16 DZA65_RS07625 type IV secretion system protein VirB5 no 0.37
    17 DZA65_RS17030 hypothetical protein no 0.37
    18 DZA65_RS12405 4-aminobutyrate--2-oxoglutarate transaminase 0.48 0.37
    19 DZA65_RS14890 hydrogenase 2 large subunit no 0.36
    20 DZA65_RS04445 FAD-dependent oxidoreductase no 0.36

    Or look for negative cofitness