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  • Top cofit genes for DZA65_RS03395 from Dickeya dianthicola ME23

    LysR family transcriptional regulator
    SEED: transcriptional regulator, MerR family

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS00470 acyl-CoA dehydrogenase no 0.51
    2 DZA65_RS04595 efflux RND transporter permease subunit no 0.48
    3 DZA65_RS06325 nicotinamide mononucleotide deamidase-related protein YfaY no 0.48
    4 DZA65_RS00885 uridine phosphorylase 0.31 0.47
    5 DZA65_RS16195 tRNA 5-hydroxyuridine modification protein YegQ 0.70 0.47
    6 DZA65_RS15180 regulatory protein GemA no 0.46
    7 DZA65_RS07345 NAD(P)H-dependent oxidoreductase no 0.46
    8 DZA65_RS20700 glutamate decarboxylase no 0.44
    9 DZA65_RS11630 YoaH family protein 0.35 0.44
    10 DZA65_RS00605 ABC transporter ATP-binding protein no 0.43
    11 DZA65_RS10840 thymidine kinase no 0.43
    12 DZA65_RS21215 O-antigen assembly polymerase no 0.43
    13 DZA65_RS05625 MFS transporter no 0.42
    14 DZA65_RS02210 amino acid transporter no 0.42
    15 DZA65_RS13830 flagella biosynthesis regulatory protein FliZ no 0.42
    16 DZA65_RS08330 ABC transporter permease subunit 0.26 0.41
    17 DZA65_RS18225 hypothetical protein no 0.41
    18 DZA65_RS19520 trp operon repressor 0.39 0.41
    19 DZA65_RS18155 two-component sensor histidine kinase BarA 0.24 0.40
    20 DZA65_RS00395 VfmB protein 0.69 0.40

    Or look for negative cofitness