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  • Top cofit genes for DZA65_RS03370 from Dickeya dianthicola ME23

    type I restriction endonuclease subunit R
    SEED: Type I restriction-modification system, restriction subunit R (EC 3.1.21.3)

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS01715 ADP-ribose diphosphatase no 0.55
    2 DZA65_RS07300 LysR family transcriptional regulator no 0.51
    3 DZA65_RS19465 transaldolase no 0.48
    4 DZA65_RS03810 YnfC family lipoprotein no 0.47
    5 DZA65_RS11155 DUF1283 family protein no 0.47
    6 DZA65_RS19295 hypothetical protein no 0.45
    7 DZA65_RS19375 LysE family transporter no 0.45
    8 DZA65_RS06430 uracil permease no 0.44
    9 DZA65_RS16555 hypothetical protein no 0.44
    10 DZA65_RS22315 D-ribose pyranase no 0.43
    11 DZA65_RS00210 sulfite exporter TauE/SafE family protein no 0.43
    12 DZA65_RS21365 YifB family Mg chelatase-like AAA ATPase 0.39 0.42
    13 DZA65_RS18570 ABC transporter permease no 0.42
    14 DZA65_RS14305 D-serine/D-alanine/glycine transporter no 0.39
    15 DZA65_RS15895 NAD(P)-binding domain-containing protein no 0.39
    16 DZA65_RS14660 NAD(P)H-dependent oxidoreductase no 0.38
    17 DZA65_RS21730 high-affinity branched-chain amino acid ABC transporter permease LivM no 0.38
    18 DZA65_RS02360 winged helix-turn-helix transcriptional regulator no 0.38
    19 DZA65_RS02775 ATPase no 0.38
    20 DZA65_RS02260 substrate-binding domain-containing protein no 0.37

    Or look for negative cofitness