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  • Top cofit genes for DZA65_RS02905 from Dickeya dianthicola ME23

    LysR family transcriptional regulator
    SEED: LysR-family transcriptional regulator YhaJ

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS14170 4'-phosphopantetheinyl transferase superfamily protein no 0.52
    2 DZA65_RS20900 thiosulfate sulfurtransferase GlpE 0.20 0.50
    3 DZA65_RS06075 acyl-CoA thioesterase II no 0.49
    4 DZA65_RS01050 Trk system potassium transporter TrkH no 0.49
    5 DZA65_RS05950 aldo/keto reductase no 0.48
    6 DZA65_RS17360 class I SAM-dependent methyltransferase 0.58 0.47
    7 DZA65_RS14735 NAD(P)H-dependent oxidoreductase 0.33 0.46
    8 DZA65_RS21660 sn-glycerol-3-phosphate ABC transporter permease UgpA no 0.45
    9 DZA65_RS19920 nif-specific transcriptional activator NifA no 0.44
    10 DZA65_RS17390 inner membrane protein YpjD 0.61 0.44
    11 DZA65_RS07605 P-type conjugative transfer protein VirB9 no 0.44
    12 DZA65_RS14660 NAD(P)H-dependent oxidoreductase no 0.43
    13 DZA65_RS15885 formimidoylglutamate deiminase 0.27 0.43
    14 DZA65_RS00230 urea carboxylase 0.26 0.42
    15 DZA65_RS13310 Fe-S cluster assembly scaffold SufA no 0.42
    16 DZA65_RS01695 4,5-DOPA dioxygenase extradiol 0.42 0.42
    17 DZA65_RS02350 LysR family transcriptional regulator 0.37 0.42
    18 DZA65_RS06220 hypothetical protein no 0.42
    19 DZA65_RS13285 cysteine desulfuration protein SufE no 0.42
    20 DZA65_RS15160 DUF2644 domain-containing protein no 0.41

    Or look for negative cofitness