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  • Top cofit genes for DZA65_RS02800 from Dickeya dianthicola ME23

    helix-turn-helix transcriptional regulator
    SEED: Transcriptional regulator, ArsR family

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS09700 DUF418 family protein no 0.46
    2 DZA65_RS01835 LacI family DNA-binding transcriptional regulator no 0.42
    3 DZA65_RS08695 nickel ABC transporter, nickel/metallophore periplasmic binding protein no 0.40
    4 DZA65_RS20095 alanyl-tRNA synthetase no 0.39
    5 DZA65_RS09185 nuclear transport factor 2 family protein no 0.39
    6 DZA65_RS17610 NAD(P)H-dependent oxidoreductase no 0.39
    7 DZA65_RS20075 hypothetical protein no 0.37
    8 DZA65_RS17875 glycine betaine/L-proline ABC transporter ATP-binding protein ProV no 0.36
    9 DZA65_RS01405 RNase E specificity factor CsrD no 0.36
    10 DZA65_RS21915 dipeptide ABC transporter permease DppB no 0.35
    11 DZA65_RS17090 dGTPase no 0.35
    12 DZA65_RS15640 type II secretion system protein GspL no 0.35
    13 DZA65_RS13225 MFS transporter no 0.35
    14 DZA65_RS14795 multidrug effflux MFS transporter no 0.35
    15 DZA65_RS01330 hypothetical protein no 0.35
    16 DZA65_RS21610 envelope stress response regulator transcription factor CpxR no 0.34
    17 DZA65_RS18270 glycerol-3-phosphate 1-O-acyltransferase PlsY no 0.34
    18 DZA65_RS08220 hypothetical protein no 0.33
    19 DZA65_RS14740 uroporphyrinogen-III C-methyltransferase no 0.33
    20 DZA65_RS22600 4Fe-4S dicluster domain-containing protein no 0.33

    Or look for negative cofitness