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  • Top cofit genes for DZA65_RS02485 from Dickeya dianthicola ME23

    DNA repair protein RadA
    SEED: DNA repair protein RadA
    KEGG: DNA repair protein RadA/Sms

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS09500 16S rRNA pseudouridine(516) synthase RsuA no 0.50
    2 DZA65_RS05390 transcriptional regulator GcvA 0.61 0.49
    3 DZA65_RS11495 AvrE-family type 3 secretion system effector no 0.48
    4 DZA65_RS06975 galactose-1-epimerase no 0.48
    5 DZA65_RS15935 IS110 family transposase no 0.47
    6 DZA65_RS07870 HTH-type transcriptional regulator Cbl no 0.45
    7 DZA65_RS03970 host cell division inhibitor Icd-like protein no 0.45
    8 DZA65_RS12940 envelope stress response membrane protein PspB no 0.44
    9 DZA65_RS15180 regulatory protein GemA no 0.43
    10 DZA65_RS20780 hypothetical protein 0.35 0.43
    11 DZA65_RS22660 helix-turn-helix domain-containing protein 0.40 0.42
    12 DZA65_RS19690 DNA mismatch repair endonuclease MutL 0.49 0.42
    13 DZA65_RS16350 lysozyme no 0.42
    14 DZA65_RS07950 phosphonate metabolism transcriptional regulator PhnF no 0.42
    15 DZA65_RS04625 IS4 family transposase no 0.42
    16 DZA65_RS16195 tRNA 5-hydroxyuridine modification protein YegQ no 0.41
    17 DZA65_RS01425 septum formation inhibitor Maf 0.64 0.41
    18 DZA65_RS22415 right-handed parallel beta-helix repeat-containing protein no 0.41
    19 DZA65_RS07995 phosphonate metabolism protein PhnP 0.42 0.41
    20 DZA65_RS17625 acyl carrier protein no 0.41

    Or look for negative cofitness