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  • Top cofit genes for DZA65_RS02425 from Dickeya dianthicola ME23

    ABC transporter permease
    SEED: Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
    KEGG: peptide/nickel transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS21285 glycoside hydrolase family 28 protein no 0.47
    2 DZA65_RS07750 beta-galactosidase no 0.46
    3 DZA65_RS16290 general secretion pathway protein GspI no 0.41
    4 DZA65_RS20975 hypothetical protein no 0.40
    5 DZA65_RS15010 hypothetical protein no 0.39
    6 DZA65_RS22210 nitrogen regulation protein NR(I) no 0.38
    7 DZA65_RS05020 TIGR03750 family conjugal transfer protein no 0.38
    8 DZA65_RS14470 hypothetical protein no 0.37
    9 DZA65_RS17780 methylthioribulose 1-phosphate dehydratase no 0.37
    10 DZA65_RS14450 AAA family ATPase no 0.37
    11 DZA65_RS11690 transcription antiterminator/RNA stability regulator CspE no 0.37
    12 DZA65_RS07705 type IV secretion protein Rhs no 0.36
    13 DZA65_RS03660 sugar ABC transporter permease no 0.36
    14 DZA65_RS18935 dihydrodipicolinate synthase family protein no 0.36
    15 DZA65_RS07260 ABC transporter substrate-binding protein no 0.35
    16 DZA65_RS07490 2-aminoethylphosphonate--pyruvate transaminase no 0.35
    17 DZA65_RS10095 fumarylacetoacetate hydrolase family protein no 0.35
    18 DZA65_RS11570 YcgN family cysteine cluster protein no 0.35
    19 DZA65_RS18860 sugar ABC transporter permease no 0.35
    20 DZA65_RS09585 YeiH family putative sulfate export transporter no 0.34

    Or look for negative cofitness