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  • Top cofit genes for DZA65_RS01960 from Dickeya dianthicola ME23

    2-iminobutanoate/2-iminopropanoate deaminase
    SEED: Bona fide RidA/YjgF/TdcF/RutC subgroup
    KEGG: UPF0076 protein YjgF

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS16070 DUF4186 domain-containing protein 0.39 0.40
    2 DZA65_RS10735 MipA/OmpV family protein no 0.38
    3 DZA65_RS21835 virulence RhuM family protein 0.50 0.37
    4 DZA65_RS17100 vitamin B12 ABC transporter substrate-binding protein BtuF no 0.37
    5 DZA65_RS20625 ABC transporter ATP-binding protein 0.29 0.37
    6 DZA65_RS22800 hypothetical protein no 0.36
    7 DZA65_RS09375 type II toxin-antitoxin system RelE/ParE family toxin no 0.35
    8 DZA65_RS16800 pectin acetylesterase no 0.35
    9 DZA65_RS18250 SH3 domain-containing protein no 0.35
    10 DZA65_RS22230 YihA family ribosome biogenesis GTP-binding protein no 0.35
    11 DZA65_RS04555 TIGR00645 family protein 0.53 0.35
    12 DZA65_RS07795 4Fe-4S dicluster domain-containing protein no 0.34
    13 DZA65_RS08865 hypothetical protein no 0.34
    14 DZA65_RS20080 helix-turn-helix transcriptional regulator no 0.34
    15 DZA65_RS18690 type I-F CRISPR-associated endoribonuclease Cas6/Csy4 no 0.33
    16 DZA65_RS16265 hypothetical protein no 0.33
    17 DZA65_RS07990 ribose 1,5-bisphosphokinase no 0.33
    18 DZA65_RS11870 high frequency lysogenization protein HflD no 0.32
    19 DZA65_RS10990 YciK family oxidoreductase 0.69 0.32
    20 DZA65_RS15255 SLC13 family permease no 0.32

    Or look for negative cofitness