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  • Top cofit genes for DZA65_RS01795 from Dickeya dianthicola ME23

    TonB system transport protein ExbD
    SEED: Biopolymer transport protein ExbD/TolR
    KEGG: biopolymer transport protein ExbD

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS01790 tol-pal system-associated acyl-CoA thioesterase 0.93 0.87
    2 DZA65_RS10905 TonB system transport protein TonB 0.91 0.80
    3 DZA65_RS11655 TerC family protein no 0.75
    4 DZA65_RS01615 stringent starvation protein A no 0.75
    5 DZA65_RS03635 sugar transferase no 0.74
    6 DZA65_RS21270 ATP-dependent RNA helicase RhlB no 0.72
    7 DZA65_RS22360 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.70 0.71
    8 DZA65_RS13875 flagellar filament capping protein FliD no 0.71
    9 DZA65_RS06465 outer membrane protein assembly factor BamC 0.47 0.71
    10 DZA65_RS02940 DedA family protein 0.60 0.70
    11 DZA65_RS15550 Fe(3+)-siderophore ABC transporter permease 0.69 0.70
    12 DZA65_RS08120 iron ABC transporter permease no 0.69
    13 DZA65_RS10810 formyltetrahydrofolate deformylase 0.51 0.69
    14 DZA65_RS13330 AI-2E family transporter YdiK 0.27 0.69
    15 DZA65_RS21825 sugar kinase no 0.69
    16 DZA65_RS19310 RNA polymerase-associated protein RapA 0.51 0.68
    17 DZA65_RS21275 guanosine-5'-triphosphate,3'-diphosphate diphosphatase 0.56 0.68
    18 DZA65_RS07110 dTDP-glucose 4,6-dehydratase 0.34 0.67
    19 DZA65_RS03625 polysaccharide biosynthesis protein 0.56 0.67
    20 DZA65_RS08125 iron ABC transporter permease no 0.67

    Or look for negative cofitness