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Cofit
Top cofit genes for DZA65_RS01740 from
Dickeya dianthicola ME23
LysR family transcriptional regulator
Rank
Hit
Name
Description
Conserved?
Cofitness
1
DZA65
_RS14715
LysR family transcriptional regulator
no
0.47
2
DZA65
_RS20790
pilus assembly protein PilM
no
0.43
3
DZA65
_RS20860
RNA-binding transcriptional accessory protein
no
0.42
4
DZA65
_RS14680
alcohol dehydrogenase catalytic domain-containing protein
no
0.41
5
DZA65
_RS06190
bifunctional UDP-sugar hydrolase/5'-nucleotidase
no
0.40
6
DZA65
_RS00315
D-xylose ABC transporter substrate-binding protein
no
0.39
7
DZA65
_RS03040
FAD:protein FMN transferase ApbE
no
0.39
8
DZA65
_RS15535
avirulence protein
no
0.39
9
DZA65
_RS04510
ABC transporter substrate-binding protein
no
0.39
10
DZA65
_RS00690
ABC transporter permease subunit
no
0.38
11
DZA65
_RS09475
response regulator transcription factor
no
0.38
12
DZA65
_RS02585
hydroxyisourate hydrolase
no
0.37
13
DZA65
_RS15590
isochorismate synthase
no
0.37
14
DZA65
_RS03515
tRNA-Gly
no
0.37
15
DZA65
_RS19235
tryptophanase
no
0.37
16
DZA65
_RS10115
citrate lyase subunit alpha
no
0.36
17
DZA65
_RS13065
aconitate hydratase AcnA
no
0.36
18
DZA65
_RS08090
DHA2 family efflux MFS transporter permease subunit
no
0.36
19
DZA65
_RS02540
amidohydrolase
no
0.36
20
DZA65
_RS09575
PTS fructose transporter subunit IIBC
no
0.35
Or look for
negative cofitness