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  • Top cofit genes for DZA65_RS01640 from Dickeya dianthicola ME23

    TIGR01212 family radical SAM protein
    SEED: COG1242: Predicted Fe-S oxidoreductase

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS07795 4Fe-4S dicluster domain-containing protein no 0.38
    2 DZA65_RS11670 PTS mannose transporter subunit IID no 0.37
    3 DZA65_RS00545 helix-turn-helix transcriptional regulator no 0.37
    4 DZA65_RS00200 N-acetyltransferase no 0.35
    5 DZA65_RS22320 YgiW/YdeI family stress tolerance OB fold protein no 0.35
    6 DZA65_RS04265 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase no 0.35
    7 DZA65_RS08725 HlyD family efflux transporter periplasmic adaptor subunit no 0.34
    8 DZA65_RS09250 allophanate hydrolase subunit 1 no 0.34
    9 DZA65_RS04920 type IV pilus biogenesis protein PilP no 0.34
    10 DZA65_RS17830 gamma-glutamyltransferase family protein no 0.34
    11 DZA65_RS07935 LysE family translocator no 0.33
    12 DZA65_RS02520 metal-dependent hydrolase 0.39 0.33
    13 DZA65_RS02845 anaerobic C4-dicarboxylate transporter no 0.32
    14 DZA65_RS08230 zinc-binding alcohol dehydrogenase family protein no 0.32
    15 DZA65_RS08760 IS3 family transposase no 0.32
    16 DZA65_RS09230 LysR family transcriptional regulator no 0.31
    17 DZA65_RS17850 allantoinase PuuE no 0.31
    18 DZA65_RS05250 tRNA (guanosine(46)-N7)-methyltransferase TrmB 0.26 0.30
    19 DZA65_RS18290 translocation/assembly module TamB no 0.30
    20 DZA65_RS13055 ABC transporter substrate-binding protein no 0.30

    Or look for negative cofitness