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  • Top cofit genes for DZA65_RS01570 from Dickeya dianthicola ME23

    BolA family iron metabolism protein IbaG
    SEED: YrbA protein

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS16715 Fe-S cluster assembly scaffold IscU no 0.63
    2 DZA65_RS02975 tagaturonate reductase no 0.63
    3 DZA65_RS16710 iron-sulfur cluster assembly protein IscA 0.82 0.62
    4 DZA65_RS11835 oligogalacturonate lyase no 0.59
    5 DZA65_RS16725 Fe-S cluster assembly transcriptional regulator IscR 0.76 0.55
    6 DZA65_RS11735 carbohydrate ABC transporter permease 0.30 0.55
    7 DZA65_RS18175 glucarate dehydratase 0.73 0.54
    8 DZA65_RS02965 glucuronate isomerase no 0.54
    9 DZA65_RS08960 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.48 0.53
    10 DZA65_RS08970 8-amino-7-oxononanoate synthase 0.62 0.53
    11 DZA65_RS02980 altronate dehydratase no 0.52
    12 DZA65_RS08980 ATP-dependent dethiobiotin synthetase BioD 0.66 0.51
    13 DZA65_RS11730 sugar ABC transporter permease no 0.51
    14 DZA65_RS11745 carbohydrate ABC transporter substrate-binding protein no 0.51
    15 DZA65_RS10950 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF 0.71 0.51
    16 DZA65_RS20125 LysR family transcriptional regulator no 0.50
    17 DZA65_RS03330 EamA family transporter no 0.50
    18 DZA65_RS03060 TetR/AcrR family transcriptional regulator no 0.49
    19 DZA65_RS11710 cupin domain-containing protein no 0.49
    20 DZA65_RS10940 tryptophan synthase subunit alpha 0.71 0.48

    Or look for negative cofitness