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  • Top cofit genes for DZA65_RS01480 from Dickeya dianthicola ME23

    metalloprotease PmbA
    SEED: TldE protein, part of TldE/TldD proteolytic complex
    KEGG: PmbA protein

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS08425 malonate decarboxylase acyl carrier protein no 0.50
    2 DZA65_RS12795 lactate utilization protein C no 0.49
    3 DZA65_RS11620 ATP-dependent DNA helicase 0.74 0.48
    4 DZA65_RS02700 L-talarate/galactarate dehydratase 0.34 0.46
    5 DZA65_RS16300 general secretion pathway protein GspK no 0.45
    6 DZA65_RS04770 type I restriction-modification system subunit M no 0.44
    7 DZA65_RS19590 MFS transporter TsgA 0.32 0.44
    8 DZA65_RS09620 dihydrolipoamide succinyltransferase no 0.43
    9 DZA65_RS16220 Gfo/Idh/MocA family oxidoreductase no 0.42
    10 DZA65_RS12600 baseplate assembly protein no 0.42
    11 DZA65_RS08340 thioredoxin 0.15 0.42
    12 DZA65_RS20190 fumarate reductase subunit FrdC no 0.42
    13 DZA65_RS09155 ATP-dependent DNA helicase DinG 0.39 0.40
    14 DZA65_RS03985 phage capsid size determination protein no 0.40
    15 DZA65_RS17625 acyl carrier protein no 0.39
    16 DZA65_RS10970 PHP domain-containing protein 0.47 0.39
    17 DZA65_RS05035 TIGR03752 family integrating conjugative element protein no 0.39
    18 DZA65_RS02900 pirin family protein no 0.39
    19 DZA65_RS06075 acyl-CoA thioesterase II 0.54 0.39
    20 DZA65_RS07250 ABC transporter ATP-binding protein no 0.38

    Or look for negative cofitness