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  • Top cofit genes for DZA65_RS00985 from Dickeya dianthicola ME23

    3'-5' ssDNA/RNA exonuclease TatD
    SEED: Deoxyribonuclease TatD
    KEGG: TatD DNase family protein

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS17920 thioredoxin TrxC 0.28 0.53
    2 DZA65_RS20810 GMP/IMP nucleotidase 0.14 0.52
    3 DZA65_RS07870 HTH-type transcriptional regulator Cbl no 0.49
    4 DZA65_RS12930 YcjX family protein no 0.46
    5 DZA65_RS17485 ankyrin repeat domain-containing protein no 0.45
    6 DZA65_RS02555 ABC transporter substrate-binding protein 0.30 0.45
    7 DZA65_RS18705 type I-F CRISPR-associated protein Csy1 no 0.45
    8 DZA65_RS22415 right-handed parallel beta-helix repeat-containing protein no 0.44
    9 DZA65_RS09285 TolC family protein no 0.44
    10 DZA65_RS04780 hypothetical protein no 0.44
    11 DZA65_RS12295 PLP-dependent transferase no 0.44
    12 DZA65_RS09500 16S rRNA pseudouridine(516) synthase RsuA 0.27 0.44
    13 DZA65_RS07040 sugar ABC transporter substrate-binding protein no 0.44
    14 DZA65_RS02900 pirin family protein 0.21 0.44
    15 DZA65_RS01900 ABC transporter permease no 0.43
    16 DZA65_RS20065 HlyD family efflux transporter periplasmic adaptor subunit 0.42 0.43
    17 DZA65_RS08425 malonate decarboxylase acyl carrier protein no 0.43
    18 DZA65_RS20780 hypothetical protein no 0.43
    19 DZA65_RS11245 type I secretion system permease/ATPase 0.26 0.43
    20 DZA65_RS04410 anaerobic nitric oxide reductase flavorubredoxin 0.41 0.42

    Or look for negative cofitness