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  • Top cofit genes for DZA65_RS00595 from Dickeya dianthicola ME23

    ABC transporter permease
    SEED: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)
    KEGG: peptide/nickel transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS08635 iron uptake system protein EfeO no 0.45
    2 DZA65_RS18675 YitT family protein no 0.41
    3 DZA65_RS22540 phosphate ABC transporter substrate-binding protein PstS no 0.39
    4 DZA65_RS20355 Trk system potassium transporter TrkA no 0.39
    5 DZA65_RS07415 glutaredoxin-dependent arsenate reductase no 0.39
    6 DZA65_RS13490 vitamin B12 ABC transporter ATP-binding protein BtuD no 0.38
    7 DZA65_RS05405 flap endonuclease Xni no 0.38
    8 DZA65_RS04880 single-stranded DNA-binding protein no 0.38
    9 DZA65_RS11055 electron transport complex subunit RsxA no 0.36
    10 DZA65_RS20980 hypothetical protein no 0.36
    11 DZA65_RS00115 formyl-CoA transferase no 0.36
    12 DZA65_RS12995 exoribonuclease II 0.35 0.35
    13 DZA65_RS11690 transcription antiterminator/RNA stability regulator CspE no 0.35
    14 DZA65_RS22655 MBL fold metallo-hydrolase no 0.35
    15 DZA65_RS04475 alpha/beta hydrolase no 0.35
    16 DZA65_RS22505 hotdog family protein 0.39 0.34
    17 DZA65_RS21140 amidohydrolase no 0.34
    18 DZA65_RS12690 guanine deaminase no 0.34
    19 DZA65_RS08460 metal ABC transporter permease no 0.34
    20 DZA65_RS08615 SEL1-like repeat protein no 0.34

    Or look for negative cofitness