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  • Top cofit genes for DZA65_RS00580 from Dickeya dianthicola ME23

    LysR family transcriptional regulator
    SEED: LysR-family transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS04535 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.56 0.67
    2 DZA65_RS04545 helix-turn-helix transcriptional regulator no 0.65
    3 DZA65_RS13830 flagella biosynthesis regulatory protein FliZ no 0.65
    4 DZA65_RS04300 LuxR family transcriptional regulator no 0.65
    5 DZA65_RS09740 alpha/beta hydrolase no 0.63
    6 DZA65_RS13440 porin no 0.62
    7 DZA65_RS12515 GAF domain-containing protein 0.37 0.62
    8 DZA65_RS08510 efflux RND transporter permease subunit no 0.61
    9 DZA65_RS18615 LysR family transcriptional regulator no 0.59
    10 DZA65_RS02195 hypothetical protein no 0.59
    11 DZA65_RS13545 arylamine N-acetyltransferase no 0.58
    12 DZA65_RS21665 sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB no 0.58
    13 DZA65_RS07455 IS3 family transposase no 0.57
    14 DZA65_RS18790 peptidoglycan-binding protein no 0.57
    15 DZA65_RS10840 thymidine kinase 0.22 0.56
    16 DZA65_RS03145 putative DNA-binding transcriptional regulator no 0.56
    17 DZA65_RS04305 cytosine permease no 0.55
    18 DZA65_RS12795 lactate utilization protein C no 0.55
    19 DZA65_RS06195 hypothetical protein no 0.55
    20 DZA65_RS14230 KR domain-containing protein no 0.55

    Or look for negative cofitness