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  • Top cofit genes for DZA65_RS00515 from Dickeya dianthicola ME23

    LuxR family transcriptional regulator
    SEED: N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator

    Rank Hit Name Description Conserved? Cofitness  
    1 DZA65_RS00395 VfmB protein no 0.50
    2 DZA65_RS17690 glutamate-5-semialdehyde dehydrogenase no 0.49
    3 DZA65_RS07900 ABC transporter substrate-binding protein no 0.48
    4 DZA65_RS05980 cytochrome o ubiquinol oxidase subunit I no 0.48
    5 DZA65_RS13610 malate/lactate/ureidoglycolate dehydrogenase no 0.48
    6 DZA65_RS13505 hypothetical protein no 0.45
    7 DZA65_RS12655 phage major tail tube protein no 0.44
    8 DZA65_RS01400 oxidoreductase 0.63 0.43
    9 DZA65_RS10060 ATP phosphoribosyltransferase no 0.43
    10 DZA65_RS17695 glutamate 5-kinase 0.45 0.42
    11 DZA65_RS13070 glutathione transferase GstA no 0.42
    12 DZA65_RS01195 thiazole synthase no 0.42
    13 DZA65_RS16685 aminopeptidase PepB no 0.42
    14 DZA65_RS03185 ribosome assembly RNA-binding protein YhbY no 0.42
    15 DZA65_RS10055 histidinol dehydrogenase no 0.42
    16 DZA65_RS21745 aspartate 1-decarboxylase autocleavage activator PanM no 0.42
    17 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC no 0.41
    18 DZA65_RS11675 DUF986 domain-containing protein no 0.41
    19 DZA65_RS09615 acyl carrier protein no 0.41
    20 DZA65_RS14290 UvrY/SirA/GacA family response regulator transcription factor 0.64 0.41

    Or look for negative cofitness