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  • Top cofit genes for DDA3937_RS08080 from Dickeya dadantii 3937

    PAS domain-containing protein
    SEED: YheO-like PAS domain

    Rank Hit Name Description Conserved? Cofitness  
    1 DDA3937_RS11970 RNA chaperone ProQ no 0.50
    2 DDA3937_RS07205 (Fe-S)-binding protein no 0.48
    3 DDA3937_RS11965 carboxy terminal-processing peptidase 0.25 0.45
    4 DDA3937_RS19150 DUF1992 domain-containing protein no 0.45
    5 DDA3937_RS15860 serine endoprotease DegP no 0.45
    6 DDA3937_RS05725 Hha toxicity modulator TomB no 0.45
    7 DDA3937_RS11685 HrpP protein no 0.45
    8 DDA3937_RS17605 excinuclease ABC subunit UvrA no 0.44
    9 DDA3937_RS15325 LacI family DNA-binding transcriptional regulator no 0.43
    10 DDA3937_RS05070 LOG family protein 0.36 0.42
    11 DDA3937_RS03095 lipoprotein NlpI no 0.42
    12 DDA3937_RS12385 LysR family transcriptional regulator no 0.42
    13 DDA3937_RS02520 alkyl hydroperoxide reductase subunit F no 0.42
    14 DDA3937_RS08430 DgsA anti-repressor MtfA no 0.40
    15 DDA3937_RS04420 Dyp-type peroxidase no 0.39
    16 DDA3937_RS15670 acid phosphatase AphA no 0.39
    17 DDA3937_RS10210 GlsB/YeaQ/YmgE family stress response membrane protein no 0.39
    18 DDA3937_RS13990 TIGR04141 family sporadically distributed protein no 0.39
    19 DDA3937_RS14150 MFS transporter no 0.39
    20 DDA3937_RS08990 glutaredoxin-dependent arsenate reductase no 0.38

    Or look for negative cofitness