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  • Top cofit genes for DDA3937_RS07020 from Dickeya dadantii 3937

    type VI secretion system contractile sheath large subunit
    SEED: Uncharacterized protein ImpC
    KEGG: type VI secretion system protein ImpC

    Rank Hit Name Description Conserved? Cofitness  
    1 DDA3937_RS14145 formate dehydrogenase accessory protein FdhE 0.40 0.58
    2 DDA3937_RS14085 nitrate reductase no 0.57
    3 DDA3937_RS12890 nicotinate phosphoribosyltransferase 0.30 0.57
    4 DDA3937_RS12235 two-component system sensor histidine kinase RstB 0.22 0.56
    5 DDA3937_RS00015 ATPase RavA stimulator ViaA no 0.55
    6 DDA3937_RS00020 ATPase RavA no 0.55
    7 DDA3937_RS14175 formate dehydrogenase-N subunit alpha no 0.54
    8 DDA3937_RS14170 formate dehydrogenase subunit beta no 0.54
    9 DDA3937_RS05450 proline-specific permease ProY no 0.51
    10 DDA3937_RS12230 two-component system response regulator RstA 0.52 0.50
    11 DDA3937_RS03295 MHS family MFS transporter 0.41 0.49
    12 DDA3937_RS03535 AI-2E family transporter 0.42 0.49
    13 DDA3937_RS06705 TerC family protein 0.32 0.49
    14 DDA3937_RS10510 YciK family oxidoreductase 0.34 0.48
    15 DDA3937_RS09515 arginine ABC transporter ATP-binding protein ArtP no 0.48
    16 DDA3937_RS04540 fumarate hydratase 0.53 0.48
    17 DDA3937_RS20305 Sec-independent protein translocase subunit TatC no 0.47
    18 DDA3937_RS09585 thioredoxin-disulfide reductase no 0.47
    19 DDA3937_RS00345 inorganic phosphate transporter PitA no 0.46
    20 DDA3937_RS15985 hypoxanthine phosphoribosyltransferase 0.37 0.46

    Or look for negative cofitness