Top cofit genes for DDA3937_RS04115 from Dickeya dadantii 3937

site-specific integrase
SEED: Phage integrase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	DDA3937_RS05990		amino acid ABC transporter permease	no	0.47
2	DDA3937_RS16695		allantoin racemase	no	0.46
3	DDA3937_RS17270		Tar ligand binding domain-containing protein	no	0.45
4	DDA3937_RS04165		replication endonuclease	no	0.45
5	DDA3937_RS18800		nitrogenase cofactor biosynthesis protein NifB	no	0.44
6	DDA3937_RS00720		sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	no	0.44
7	DDA3937_RS00165		uracil-xanthine permease	no	0.44
8	DDA3937_RS03900		replication initiator protein A	no	0.43
9	DDA3937_RS05340		N-acetyltransferase	no	0.43
10	DDA3937_RS00370		mannonate dehydratase	0.41	0.42
11	DDA3937_RS19950		amino acid ABC transporter permease	no	0.41
12	DDA3937_RS16330		C69 family dipeptidase	no	0.41
13	DDA3937_RS08545		cytochrome ubiquinol oxidase subunit I	no	0.41
14	DDA3937_RS23465		hypothetical protein	no	0.40
15	DDA3937_RS07630		alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase	0.40	0.39
16	DDA3937_RS21000		ABC transporter ATP-binding protein	no	0.39
17	DDA3937_RS05865		2Fe-2S ferredoxin-like protein	no	0.38
18	DDA3937_RS13180		biofilm formation regulator BssS	no	0.38
19	DDA3937_RS22355		mobilization protein mobC	no	0.38
20	DDA3937_RS07530		malate/lactate/ureidoglycolate dehydrogenase	no	0.37

Or look for negative cofitness