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  • Top cofit genes for Atu4546 from Agrobacterium fabrum C58

    IclR family transcriptional regulator
    SEED: Pca regulon regulatory protein PcaR
    KEGG: IclR family transcriptional regulator, pca regulon regulatory protein

    Rank Hit Name Description Conserved? Cofitness  
    1 Atu4547 3-oxoadipate CoA-transferase subunit A 0.89 0.54
    2 Atu4548 3-oxoadipate CoA-transferase subunit B 0.91 0.53
    3 Atu4549 beta-ketoadipyl CoA thiolase 0.91 0.52
    4 Atu4542 beta-ketoadipate enol-lactone hydrolase 0.95 0.51
    5 Atu4538 3-carboxy-cis,cis-muconate cycloisomerase no 0.50
    6 Atu4539 protocatechuate 3,4-dioxygenase alpha chain 0.96 0.49
    7 Atu4541 carboxymuconolactone decarboxylase 0.95 0.41
    8 Atu4543 LysR family transcriptional regulator 0.65 0.38
    9 Atu4540 protocatechuate 3,4-dioxygenase subunit beta 0.96 0.31
    10 Atu4533 amino acid ABC transporter ATPase/permease no 0.28
    11 Atu4532 shikimate 5-dehydrogenase 0.64 0.28
    12 Atu4529 hypothetical protein 0.57 0.27
    13 Atu4536 amino acid ABC transporter permease no 0.27
    14 Atu4537 amino acid ABC transporter permease no 0.26
    15 Atu4531 3-dehydroquinate dehydratase 0.61 0.26
    16 Atu4534 amino acid ABC transporter substrate-binding protein no 0.25
    17 Atu4535 amino acid ABC transporter substrate-binding protein no 0.25
    18 Atu4517 branched chain amino acid ABC transporter permease no 0.25
    19 Atu0536 hypothetical protein no 0.18
    20 Atu2461 hypothetical protein no 0.18

    Or look for negative cofitness