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  • Top cofit genes for Atu4539 from Agrobacterium fabrum C58

    protocatechuate 3,4-dioxygenase alpha chain
    SEED: Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3)
    KEGG: protocatechuate 3,4-dioxygenase, alpha subunit

    Rank Hit Name Description Conserved? Cofitness  
    1 Atu4547 3-oxoadipate CoA-transferase subunit A 0.91 0.87
    2 Atu4548 3-oxoadipate CoA-transferase subunit B 0.86 0.87
    3 Atu4542 beta-ketoadipate enol-lactone hydrolase 0.94 0.86
    4 Atu4549 beta-ketoadipyl CoA thiolase 0.92 0.86
    5 Atu4538 3-carboxy-cis,cis-muconate cycloisomerase 0.59 0.85
    6 Atu4543 LysR family transcriptional regulator 0.93 0.67
    7 Atu4541 carboxymuconolactone decarboxylase 0.94 0.65
    8 Atu4529 hypothetical protein 0.58 0.59
    9 Atu4533 amino acid ABC transporter ATPase/permease no 0.58
    10 Atu4534 amino acid ABC transporter substrate-binding protein no 0.55
    11 Atu4540 protocatechuate 3,4-dioxygenase subunit beta 0.96 0.55
    12 Atu4531 3-dehydroquinate dehydratase 0.60 0.53
    13 Atu4536 amino acid ABC transporter permease no 0.50
    14 Atu4546 IclR family transcriptional regulator 0.96 0.50
    15 Atu4535 amino acid ABC transporter substrate-binding protein no 0.47
    16 Atu4537 amino acid ABC transporter permease no 0.45
    17 Atu4532 shikimate 5-dehydrogenase 0.65 0.43
    18 Atu4517 branched chain amino acid ABC transporter permease 0.60 0.36
    19 Atu4505 LacI family transcriptional regulator 0.21 0.31
    20 Atu2115 pyrophosphate--fructose-6-phosphate 1-phosphotransferase no 0.31

    Or look for negative cofitness