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  • Top cofit genes for Atu4532 from Agrobacterium fabrum C58

    shikimate 5-dehydrogenase
    SEED: Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25)
    KEGG: shikimate dehydrogenase

    Rank Hit Name Description Conserved? Cofitness  
    1 Atu4529 hypothetical protein 0.89 0.65
    2 Atu4533 amino acid ABC transporter ATPase/permease no 0.64
    3 Atu4531 3-dehydroquinate dehydratase 0.85 0.62
    4 Atu4534 amino acid ABC transporter substrate-binding protein no 0.59
    5 Atu4536 amino acid ABC transporter permease no 0.56
    6 Atu4535 amino acid ABC transporter substrate-binding protein no 0.48
    7 Atu4537 amino acid ABC transporter permease no 0.47
    8 Atu4539 protocatechuate 3,4-dioxygenase alpha chain 0.65 0.43
    9 Atu4548 3-oxoadipate CoA-transferase subunit B 0.50 0.39
    10 Atu4538 3-carboxy-cis,cis-muconate cycloisomerase no 0.38
    11 Atu4547 3-oxoadipate CoA-transferase subunit A 0.57 0.38
    12 Atu4530 TetR family transcriptional regulator 0.33 0.37
    13 Atu4542 beta-ketoadipate enol-lactone hydrolase 0.40 0.36
    14 Atu4549 beta-ketoadipyl CoA thiolase 0.56 0.35
    15 Atu3279 methanesulfonate sulfonatase no 0.35
    16 Atu4540 protocatechuate 3,4-dioxygenase subunit beta 0.65 0.34
    17 Atu4543 LysR family transcriptional regulator no 0.34
    18 Atu1874 RecA protein 0.23 0.31
    19 Atu3908 GntR family transcriptional regulator no 0.30
    20 Atu1780 ATP-dependent DNA helicase no 0.30

    Or look for negative cofitness