Top cofit genes for Atu4162 from Agrobacterium fabrum C58

two-component response regulator
SEED: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like

Rank	Hit	Name	Description	Conserved?	Cofitness
1	Atu4160		RNA polymerase sigma factor	0.89	0.64
2	Atu0153		transcriptional regulator, Fur family	no	0.57
3	Atu2521		Protein regulated by acid pH	no	0.54
4	Atu1238		polysaccharide export protein	0.81	0.54
5	Atu2373		UDP-hexose transferase	0.38	0.52
6	Atu0499		hypothetical protein	no	0.51
7	Atu3777		hypothetical protein	no	0.51
8	Atu6021		D-nopaline dehydrogenase	no	0.51
9	Atu2377		succinoglycan biosynthesis transport protein	no	0.50
10	Atu2522		agrobacterium chromosomal virulence protein B	no	0.50
11	Atu1251		O-acetylhomoserine sulfhydrylase	0.87	0.50
12	Atu6019		D-nopaline dehydrogenase	no	0.49
13	Atu0482		polysaccharide deacetylase	no	0.48
14	Atu6017		NAD/NADP octopine/nopaline dehydrogenase	no	0.48
15	Atu6020		conserved hypothetical protein	no	0.47
16	Atu4055		endo-1,3-1,4-beta-glycanase	no	0.47
17	Atu8188		hypothetical protein	no	0.47
18	Atu0480		polysaccharide biosynthesis protein	no	0.47
19	Atu1236		polysaccharide biosynthesis glycosyltransferase	no	0.47
20	Atu3908		GntR family transcriptional regulator	no	0.45

Or look for negative cofitness