Top cofit genes for Atu4089 from Agrobacterium fabrum C58

ABC transporter permease
SEED: Transport ATP-binding protein CydD
KEGG: ATP-binding cassette, subfamily C, bacterial

Rank	Hit	Name	Description	Conserved?	Cofitness
1	Atu4090		ABC transporter permease	no	0.89
2	Atu4092		cytochrome d oxidase subunit II	0.90	0.84
3	Atu4091		cytochrome d oxidase	0.94	0.83
4	Atu4081		aspartate racemase	no	0.71
5	Atu4082		AsnC family transcriptional regulator	no	0.66
6	Atu8036		protein YBGT-like protein	no	0.59
7	Atu0251		hypothetical protein	no	0.38
8	Atu4088		transcriptional regulator	0.62	0.35
9	Atu3296		two component response regulator for C4-dicarboxylate transport	0.72	0.25
10	Atu3744		ABC transporter permease	no	0.25
11	Atu3297		two component sensor kinase for C4-dicarboxylate transport	no	0.25
12	Atu3298		C4-dicarboxylate transporter DctA	no	0.23
13	Atu0143		MFS permease	no	0.23
14	Atu0296		NADH-ubiquinone oxidoreductase	no	0.22
15	Atu1327		NADH-ubiquinone oxidoreductase	no	0.21
16	Atu0978		two component response regulator	no	0.21
17	Atu0050		two component response regulator	no	0.20
18	Atu0138		surfeit 1	0.35	0.20
19	Atu4433		oligopeptide ABC transporter permease	no	0.19
20	Atu0979		two component sensor kinase	no	0.19

Or look for negative cofitness