Top cofit genes for Atu3831 from Agrobacterium fabrum C58

phage-related integrase
SEED: Phage integrase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	Atu3695		hypothetical protein	no	0.24
2	Atu4842		sugar ABC transporter substrate-binding protein	no	0.21
3	Atu4857		mobilization protein C	no	0.21
4	Atu4034		two component sensor kinase	no	0.20
5	Atu3065		sugar ABC transporter permease	no	0.20
6	Atu4799		dTDP-4-dehydrorhamnose 3,5-epimerase	no	0.19
7	Atu4856		nucleotidyltransferase	0.31	0.19
8	Atu4834		6-phosphogluconate dehydrogenase	no	0.19
9	Atu2705		ABC transporter, nucleotide binding/ATPase protein (protein)	no	0.19
10	Atu3046		oxidoreductase	no	0.19
11	Atu3830		MFS permease	no	0.18
12	Atu4855		conjugation protein	no	0.18
13	Atu4845		sugar ABC transporter permease	no	0.18
14	Atu3037		dipeptide ABC transporter permease	no	0.17
15	Atu3040		hypothetical protein	no	0.17
16	Atu3041		dipeptide ABC transporter substrate-binding protein	no	0.17
17	Atu4108		ribonuclease D	no	0.17
18	Atu4849		NADP-dependent aldehyde dehydrogenase	no	0.17
19	Atu3051		agropine synthesis reductase	no	0.17
20	Atu3050		AgaE protein	no	0.17

Or look for negative cofitness