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  • Top cofit genes for Atu3387 from Agrobacterium fabrum C58

    sigma factor
    SEED: FIG006045: Sigma factor, ECF subfamily
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 Atu2044 HFLC protein 0.57 0.22
    2 Atu2464 formyltetrahydrofolate deformylase no 0.20
    3 Atu0908 transcriptional regulator 0.66 0.20
    4 Atu0074 molybdopterin biosynthesis protein no 0.19
    5 Atu2045 HFLK protein 0.60 0.19
    6 Atu4621 dipeptide ABC transporter ATPase no 0.19
    7 Atu3401 aldehyde dehydrogenase no 0.19
    8 Atu1103 rRNA-adenine N6,N6-dimethyltransferase 0.23 0.19
    9 Atu2832 tRNA modification GTPase no 0.19
    10 Atu4404 hypothetical protein no 0.18
    11 Atu1021 outer membrane protein no 0.18
    12 Atu0750 ABC transporter, membrane spanning protein no 0.18
    13 Atu3655 antioxidant protein no 0.17
    14 Atu2831 glucose inhibited division protein A no 0.17
    15 Atu3471 branched-chain alpha-keto acid dehydrogenase subunit E2 no 0.17
    16 Atu3640 hypothetical protein no 0.17
    17 Atu3661 hypothetical protein no 0.17
    18 Atu3757 hypothetical protein no 0.17
    19 Atu3517 acetyltransferase no 0.17
    20 Atu0125 peptide methionine sulfoxide reductase no 0.17

    Or look for negative cofitness