Top cofit genes for Atu2538 from Agrobacterium fabrum C58

N-methylproline demethylase
SEED: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34)
KEGG:

Rank	Hit	Name	Description	Conserved?	Cofitness
1	Atu0602		glutamine synthetase	0.30	0.30
2	Atu8095		hypothetical protein	no	0.27
3	Atu0999		magnesium transport protein	0.26	0.26
4	Atu0601		oxidoreductase	no	0.26
5	Atu0659		NTP pyrophosphohydrolase, MutT family	no	0.25
6	Atu3936		GntR family transcriptional regulator	no	0.25
7	Atu0368		tRNA pseudouridine synthase I	0.25	0.25
8	Atu4177		ATP-dependent Clp protease, ATP-binding subunit	no	0.25
9	Atu2535		two component sensor kinase	no	0.25
10	Atu0251		hypothetical protein	no	0.25
11	Atu1967		hypothetical protein	no	0.25
12	Atu2245		Na+/Pi-cotransporter	no	0.24
13	Atu1300		MFS permease	no	0.24
14	Atu3727		hypothetical protein	0.53	0.23
15	Atu0359		hemolysin	no	0.22
16	Atu0061		ATP-dependent DNA helicase	no	0.22
17	Atu0692		glutathione-regulated potassium-efflux system protein	no	0.21
18	Atu3925		hypothetical protein	no	0.21
19	Atu4635		hypothetical protein	no	0.21
20	Atu2685		aconitate hydratase	no	0.20

Or look for negative cofitness