Top cofit genes for Atu2165 from Agrobacterium fabrum C58

bacteriophytochrome protein
SEED: Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-)

Rank	Hit	Name	Description	Conserved?	Cofitness
1	Atu0224		components of type IV pilus, pilin subunit	no	0.26
2	Atu1201		ABC transporter, nucleotide binding/ATPase protein	no	0.21
3	Atu8083		hypothetical protein	no	0.21
4	Atu0454		hypothetical protein	no	0.21
5	Atu0217		components of type IV pilus	0.40	0.20
6	Atu0436		hypothetical protein	no	0.20
7	Atu0452		hypothetical protein	no	0.20
8	Atu4500		MFS permease	no	0.19
9	Atu4210		sugars ABC transporter permease	no	0.19
10	Atu8127		hypothetical protein	no	0.19
11	Atu0464		hypothetical protein	no	0.19
12	Atu0930		hypothetical protein	no	0.19
13	Atu2389		ABC transporter, membrane spanning protein	no	0.19
14	Atu0458		hypothetical protein	no	0.18
15	Atu4778		non-heme chloroperoxidase	no	0.18
16	Atu2431		hypothetical protein	no	0.18
17	Atu4132		AraC family transcriptional regulator	no	0.18
18	Atu8122		hypothetical protein	no	0.18
19	Atu6143		ABC transporter, membrane spanning protein (agrocinopine)	no	0.18
20	Atu3172		sugar ABC transporter permease	no	0.18

Or look for negative cofitness