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  • Top cofit genes for Atu2020 from Agrobacterium fabrum C58

    transcriptional regulator, TetR family
    SEED: Transcriptional regulator, TetR family

    Rank Hit Name Description Conserved? Cofitness  
    1 Atu3731 5-formyltetrahydrofolate cyclo-ligase no 0.60
    2 Atu1686 peptidyl-prolyl cis-trans isomerse D no 0.59
    3 Atu2747 hypothetical protein 0.46 0.58
    4 Atu2569 thiamine biosynthesis protein no 0.58
    5 Atu3290 phosphomethylpyrimidine kinase no 0.57
    6 Atu3483 3-methyl-2-oxobutanoate hydroxymethyltransferase no 0.57
    7 Atu3288 hydroxyethylthiazole kinase no 0.56
    8 Atu3997 biotin synthetase no 0.56
    9 Atu4096 nicotinate-nucleotide pyrophosphorylase no 0.56
    10 Atu4098 quinolinate synthetase no 0.56
    11 Atu2015 aminotransferase no 0.56
    12 Atu3482 pantoate--beta-alanine ligase no 0.56
    13 Atu2548 phosphoribosylaminoimidazole-succinocarboxamide synthase no 0.55
    14 Atu4097 L-aspartate oxidase no 0.55
    15 Atu4000 adenosylmethionine-8-amino-7-oxononanoate aminotransferase no 0.55
    16 Atu3998 8-amino-7-oxononanoate synthase no 0.54
    17 Atu0432 O-succinylhomoserine sulfhydrylase 0.68 0.53
    18 Atu1589 aminotransferase, class I 0.73 0.53
    19 Atu1748 NIFU-like protein no 0.53
    20 Atu1454 siroheme synthase 0.67 0.53

    Or look for negative cofitness