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  • Top cofit genes for Atu1485 from Agrobacterium fabrum C58

    ECF family sigma factor
    SEED: RNA polymerase sigma-54 factor RpoN
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 Atu3672 polyketide synthase no 0.24
    2 Atu2038 hypothetical protein no 0.21
    3 Atu4801 NAD-dependent epimerase/dehydratase no 0.20
    4 Atu2463 hypothetical protein no 0.19
    5 Atu3088 spermidine/putrescine ABC transporter substrate-binding protein no 0.19
    6 Atu1199 ABC transporter, membrane spanning protein no 0.19
    7 Atu8020 hypothetical protein no 0.19
    8 Atu0764 hypothetical protein no 0.18
    9 Atu2014 ABC transporter, substrate binding protein no 0.18
    10 Atu0879 RhtB family transporter no 0.18
    11 Atu0504 hypothetical protein no 0.18
    12 Atu3441 nitrilotriacetate monooxygenase no 0.18
    13 Atu0731 divalent cation transporter no 0.18
    14 Atu4568 ABC transporter substrate binding protein no 0.18
    15 Atu1808 UDP-glucose:ceramide glycosyltransferase no 0.18
    16 Atu4292 chloramphenicol resistance protein no 0.18
    17 Atu4819 hypothetical protein no 0.18
    18 Atu4210 sugars ABC transporter permease no 0.17
    19 Atu1456 sulfite reductase (NADPH) hemoprotein beta-component 0.14 0.17
    20 Atu1455 hypothetical protein no 0.17

    Or look for negative cofitness