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  • Top cofit genes for Atu0701 from Agrobacterium fabrum C58

    GGDEF family protein
    SEED: diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)

    Rank Hit Name Description Conserved? Cofitness  
    1 Atu0700 two component sensor kinase no 0.59
    2 Atu3207 diguanylate cyclase 0.54 0.54
    3 Atu3496 hypothetical protein no 0.52
    4 Atu3495 diguanylate cyclase no 0.51
    5 Atu2332 two component sensor kinase/response regulator hybrid no 0.49
    6 Atu1983 hypothetical protein no 0.47
    7 Atu4490 diguanylate cyclase no 0.42
    8 Atu0524 transcriptional regulator, LuxR family no 0.39
    9 Atu4692 diguanylate cyclase no 0.38
    10 Atu0219 components of type IV pilus no 0.37
    11 Atu0525 transcriptional regulator, LuxR family no 0.36
    12 Atu1631 two component response regulator 0.60 0.32
    13 Atu0217 components of type IV pilus no 0.32
    14 Atu0221 component of type IV pilus no 0.31
    15 Atu0215 hypothetical protein no 0.31
    16 Atu2229 ABC transporter, substrate binding protein (amino acid) no 0.31
    17 Atu2038 hypothetical protein no 0.29
    18 Atu3764 sigma 54 dependent transcriptional activator no 0.28
    19 Atu0185 methylglyoxal synthase no 0.26
    20 Atu1717 long-chain fatty acid transport protein no 0.26

    Or look for negative cofitness