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  • Top cofit genes for Atu0218 from Agrobacterium fabrum C58

    component of type IV pilus
    SEED: Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily
    KEGG: pilus assembly protein CpaF

    Rank Hit Name Description Conserved? Cofitness  
    1 Atu0219 components of type IV pilus 0.62 0.31
    2 Atu0215 hypothetical protein 0.65 0.28
    3 Atu0221 component of type IV pilus 0.65 0.27
    4 Atu4808 exopolysaccharide synthesis protein no 0.26
    5 Atu0701 GGDEF family protein 0.30 0.25
    6 Atu0217 components of type IV pilus 0.83 0.24
    7 Atu3496 hypothetical protein no 0.23
    8 Atu0525 transcriptional regulator, LuxR family no 0.22
    9 Atu1653 hypothetical protein no 0.22
    10 Atu4490 diguanylate cyclase no 0.22
    11 Atu3704 hypothetical protein no 0.22
    12 Atu3112 sugar ABC transporter permease no 0.22
    13 Atu0524 transcriptional regulator, LuxR family no 0.21
    14 Atu3830 MFS permease no 0.20
    15 Atu1742 hypothetical protein 0.37 0.20
    16 Atu4280 short-chain dehydrogenase no 0.20
    17 Atu1983 hypothetical protein no 0.20
    18 Atu3668 siderophore biosynthesis protein no 0.20
    19 Atu1631 two component response regulator 0.36 0.20
    20 Atu0279 transcriptional regulator, TetR family no 0.20

    Or look for negative cofitness