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  • Top cofit genes for AMB_RS19705 from Magnetospirillum magneticum AMB-1

    GGDEF domain-containing protein
    SEED: diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)

    Rank Hit Name Description Conserved? Cofitness  
    1 AMB_RS20900 FAD-binding oxidoreductase no 0.68
    2 AMB_RS16210 peptidoglycan-associated lipoprotein Pal no 0.57
    3 AMB_RS18160 ABC transporter ATP-binding protein no 0.57
    4 AMB_RS12790 ABC transporter ATP-binding protein no 0.54
    5 AMB_RS10540 KR domain-containing protein no 0.53
    6 AMB_RS24005 PAS domain-containing sensor histidine kinase no 0.51
    7 AMB_RS04845 hypothetical protein no 0.50
    8 AMB_RS21335 hypothetical protein no 0.49
    9 AMB_RS09800 uptake hydrogenase no 0.48
    10 AMB_RS17265 MexH family multidrug efflux RND transporter periplasmic adaptor subunit no 0.47
    11 AMB_RS19700 DUF2336 domain-containing protein 0.44 0.47
    12 AMB_RS02830 chromosome partitioning protein ParA no 0.46
    13 AMB_RS09805 uptake hydrogenase no 0.46
    14 AMB_RS03880 tetratricopeptide repeat-containing protein no 0.46
    15 AMB_RS19160 methyltransferase domain-containing protein no 0.46
    16 AMB_RS22815 hypothetical protein no 0.46
    17 AMB_RS03630 hypothetical protein no 0.45
    18 AMB_RS17425 carbohydrate porin no 0.45
    19 AMB_RS09885 hypothetical protein no 0.45
    20 AMB_RS11455 GIY-YIG nuclease family protein no 0.45

    Or look for negative cofitness