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  • Top cofit genes for ABID97_RS08165 from Variovorax sp. OAS795

    sigma-70 family RNA polymerase sigma factor
    SEED: RNA polymerase sigma factor
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 ABID97_RS16075 ABC transporter substrate-binding protein no 0.33
    2 ABID97_RS08260 Rieske 2Fe-2S domain-containing protein 0.21 0.32
    3 ABID97_RS09390 helix-turn-helix domain-containing protein 0.23 0.31
    4 ABID97_RS27195 hypothetical protein no 0.30
    5 ABID97_RS17345 efflux transporter outer membrane subunit 0.47 0.30
    6 ABID97_RS27085 DNA alkylation repair protein no 0.30
    7 ABID97_RS21450 formyltransferase family protein no 0.29
    8 ABID97_RS24090 DoxX family protein no 0.29
    9 ABID97_RS08800 NAD/NADP octopine/nopaline dehydrogenase family protein no 0.29
    10 ABID97_RS13750 hypothetical protein no 0.29
    11 ABID97_RS05545 redoxin domain-containing protein no 0.28
    12 ABID97_RS13500 tripartite tricarboxylate transporter substrate-binding protein no 0.28
    13 ABID97_RS26835 DUF1629 domain-containing protein no 0.28
    14 ABID97_RS16680 tRNA threonylcarbamoyladenosine dehydratase 0.42 0.28
    15 ABID97_RS11300 hypothetical protein no 0.28
    16 ABID97_RS21065 L-histidine N(alpha)-methyltransferase no 0.28
    17 ABID97_RS16625 LysE family translocator no 0.27
    18 ABID97_RS24140 RNA-binding protein no 0.27
    19 ABID97_RS01775 alpha/beta hydrolase no 0.27
    20 ABID97_RS17445 universal stress protein no 0.27

    Or look for negative cofitness