Top cofit genes for ABI39_RS21085 from Phocaeicola dorei CL03T12C01

response regulator transcription factor
SEED: Phosphate regulon transcriptional regulatory protein PhoB (SphR)

Rank	Hit	Name	Description	Conserved?	Cofitness
1	ABI39_RS03140		site-specific integrase	no	0.54
2	ABI39_RS09085		RagB/SusD family nutrient uptake outer membrane protein	no	0.51
3	ABI39_RS09920		sigma-70 family RNA polymerase sigma factor	0.29	0.50
4	ABI39_RS12555		DUF4857 domain-containing protein	no	0.48
5	ABI39_RS18645		hypothetical protein	no	0.48
6	ABI39_RS03120		helix-turn-helix domain-containing protein	no	0.48
7	ABI39_RS10840		DUF1624 domain-containing protein	no	0.48
8	ABI39_RS03545		O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	no	0.47
9	ABI39_RS03865		response regulator transcription factor	no	0.47
10	ABI39_RS08245		amino acid-binding protein	no	0.47
11	ABI39_RS04540		RagB/SusD family nutrient uptake outer membrane protein	no	0.46
12	ABI39_RS02940		SusC/RagA family TonB-linked outer membrane protein	no	0.46
13	ABI39_RS16615		RagB/SusD family nutrient uptake outer membrane protein	no	0.46
14	ABI39_RS01090		FimB/Mfa2 family fimbrial subunit	no	0.46
15	ABI39_RS04520		L-fucose:H+ symporter permease	no	0.45
16	ABI39_RS01875		Crp/Fnr family transcriptional regulator	no	0.45
17	ABI39_RS00710		RagB/SusD family nutrient uptake outer membrane protein	no	0.45
18	ABI39_RS07375		PepSY domain-containing protein	no	0.44
19	ABI39_RS20590		response regulator	no	0.44
20	ABI39_RS00525		alpha-L-fucosidase	no	0.43

Or look for negative cofitness